Phyloinformatics Course

This web site supports a course on phyloinformatics.

Course lectures

Course lectures and notes are available here.

Code

Code for the examples is available on GitHub

Tools and services

Example tools and services.

• Specimen code parser
• Display tree from NEXUS file (or URL) in SVG

Reconcilation services for Google Refine (see Using Google Refine and taxonomic databases (EOL, NCBI, uBio, WORMS) to clean messy data on how to use these).

• EOL http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_eol.php
• NCBI taxonomy http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_ncbi.php
• uBio FindIT http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_ubio.php
• WORMS http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_worms.php
• GBIF http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_gbif.php

Demos

Mashup	SpaceTree	EOL iPad webapp
Treemap	BLAST sequence to get tree